»»Software Tools
Software Tools2018-12-04T11:15:17+00:00

Software Tools

An analytic approach to evaluate Near InfraRed (NIR) data from plants under stress conditions

Reference publication: Vello E, Tomita A, Diallo AO, Bureau TE. A Comprehensive Approach to Assess Arabidopsis Survival Phenotype in Water-Limited Condition Using a Non-invasive High-Throughput Phenomics Platform. Front Plant Sci. 2015 Dec 15;6:1101 1) Definition of percentiles and quartiles Figure 1: Bell-shaped curve. The central [...]

Image Processing with ImageMagick, ImageJ & R/EBImage

LemnaGrid is a platform for image processing and analysis. It uses Ipp, opencv, and other libraries as backend along with propriatory algorithms and provides graphical interface to the user to access a wide range of useful tools. The functionality of LemnaGrid can be extended interacting with external image processing applications. [...]

Calculation of daily water consumption and water use efficiency

Reference publication: Ge, Yufeng; Bai, Geng; Stoerger, Vincent; Schnable, James C. (2016). Temporal dynamics of maize plant growth, water use, and leaf water content using automated high throughput RGB and hyperspectral imaging. In: Computers and Electronics in Agriculture, S. 625–632. DOI: 10.1016/j.compag.2016.07.028. http://www.sciencedirect.com/science/article/pii/S0168169916305464 Evapotranspiration & water use efficiency The automated [...]